Year 2021

Alain, K., Vince, E., Courtine, D., Maignien, L., Zeng, X., Shao, Z., Jebbar, M. (2021). Thermococcus henrietii sp. nov., a novel extreme thermophilic and piezophilic sulfur-reducing archaeon isolated from a deep-sea hydrothermal chimney. International Journal of Systematic and Evolutionary Microbiology, 71(7), 004895 (6p.). Publisher's official version : doi.org/10.1099/ijsem.0.004895, Open Access version : https://archimer.ifremer.fr/doc/00706/81761/

Allioux, M., Jebbar, M., Slobodkina, G., Slobodkin, A., Moalic, Y., Frolova, A., Shao, Z., Alain, K. (2021). Complete genome sequence of Thermosulfurimonas marina sp. nov., an anaerobic thermophilic chemolithoautotrophic bacterium isolated from a shallow hydrothermal vent. Marine Genomics, 55, 100800. doi. org/10.1016/j.margen.2020.100800.

Brandt, M., Trouche, B., Quintric, L., Günther, B., Wincker, P., Poulain, J., Arnaud‐haond, S. Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding. Molecular Ecology Resources, 21(6), 1904-1921. doi.org/10.1111/1755-0998.13398

Brandt, M., Pradillon, F., Trouche, B., Henry, N., Liautard-Haag, C., Cambon-Bonavita, M-A., Cueff-Gauchard, V., Wincker, P., Belser, C., Poulain, J., Arnaud-Haond S., Zeppilli, D. (2021). Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. Scientific Reports, 11(1), 7856 (14p.). Publisher's official version : doi.org/10.1038/s41598-021-86396-8

Cambon-Bonavita, M-A., Aubé, J., Cueff-Gauchard, V., Reveillaud, J. Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria. Microbiome 9, 87 (2021). doi.org/10.1186/s40168-021-01045-6

Cathalot, C., Roussel, E.G., Perhirin, A., Creff, V., Donval, J.-P., Guyader, V., Roullet, G., Gula, J., Tamburini, C., Garel, M.,  Godfroy, A.,  Sarradin, P.-M. (2021). Hydrothermal plumes as hotspots for deep-ocean heterotrophic microbial biomass production. Nature Communications 12, 6861. doi.org/10.1038/s41467-021-26877-6

Courtine D., Vince E., Maignien L., Philippon X., Gayet Nicolas, Shao Zongze, Alain K. (2021). Thermococcus camini sp. nov., a hyperthermophilic and piezophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Atlantic Ridge. International Journal of Systematic and Evolutionary Microbiology, 71(7), 004853 (7p.). doi : 10.1099/ijsem.0.004853

Cozannet, M., Borrel, G., Roussel, E., Moalic, Y., Allioux, M., Sanvoisin, A., Toffin, L., Alain, K. (2021). New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments. Microorganisms, 9(1), 30. doi.org/10.3390/microorganisms9010030.

Dibner, R. R, Weaver, A M., Brock, M. T, Custer, G. F, Morrison, H. G, Maignien, L., Weinig C. (2021). Time outweighs the effect of host developmental stage on microbial community composition. FEMS Microbiology Ecology, in press. https://doi.org/10.1093/femsec/fiab102

Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, Blankenberg, D., Eppley, J. M., Sjödin, A., Scott, J. J., Vasquez-Campos, X., McKay, L. J., McDaniel, E. A., Stevens, S. L. R., Aderson, R. E., Fuesel, J., Fernandez-uerra, A., Maignien, L., Delmont, T. O., Willis, A. D. (2021). Community-led, integrated, reproducible multi-omics with anvi’o. Nature Microbiology, 6(1), 3-6. doi.org/10.1038/s41564-020-00834-3

François, D., X., Godfroy, A., Mathien, C., Aubé J., Cathalot, C., Lesongeur, F., L’Haridon, S., Philippon, X., Roussel, E., G. (2021). Persephonella atlantica sp. nov.: How to adapt to physico-chemical gradients in high temperature hydrothermal habitats. Systematic and Applied Microbiology, SYAPM 126176, Volume 44, Issue 1, January 2021, 126176, doi:1016/j.syapm.2020.12617

Hajj, M., Langendijk-Genevaux, P., Batista, M., Quentin, Y., Laurent, S., Capeyrou, R., Abdel-Razzak, Z., Flament, D., Chamieh, H., Fichant, G., Clouet-D’orval, B., Bouvier, M. (2021). Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase. Biomolecules, 11(7), 950 (23p.). Publisher's official version doi.org/10.3390/biom11070950, Open Access version : https://archimer.ifremer.fr/doc/00702/81418/

Haverkamp, T.H.A, Lossouarn, J., Zhaxybayeva, O., Lyu, J., Bienvenu, N., Geslin, C. & Nesbø, C.L. (2021). Newly identified proviruses in Thermotogota suggest that viruses are the vehicles on the highways of interphylum gene sharing. Environmental Microbiology, 23(11), 7105-7120. doi: 10.1111/1462-2920.15723.

Klasek, S.A., Brock, M.T. , Morrison, H.G., Weinig, C., Maignien, L. (2021). Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure. Front Microbiol  2021 Apr 7;12:645784. doi: 10.3389/fmicb.2021.645784

Langendijk-Genevaux, Hajj, M., Batista P., M., Quentin, Y., Laurent, S., Capeyrou, R., Abdel-Razzak, Z., Flament, D., Chamieh, H., Fichant, G., Clouet-d’Orval, B., Bouvier, M. (2021). Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase. Biomolecules, 11, 950. doi.org/10.3390/biom11070950

Le Guellec, S., Leroy, E., Courtine, D., Godfroy, A., Roussel, E. (2021). H2-dependent formate production by hyperthermophilic Thermococcales: an alternative to sulfur reduction for reducing-equivalents disposal. The ISME Journal, in press. doi : 10.1038/s41396-021-01020-x

Mieszkin, S., Pouder, E., Uroz, S., Simon-Colin, C. & Alain, K. (2021). Acidisoma silvae sp. nov. and Acidisoma cellulosilytica sp. nov., two acidophilic bacteria isolated from decaying wood, hydrolyzing cellulose and producing poly-3-hydroxybutyrate. Microorganisms 9, 2053. Doi.org/10.3390/microorganisms9102053

Moalic, Y., Dalmasso, C., Courtine, D., Hartunians, J., Georges, M., Oger, P., Zeng, X., Shao, Z., Jebbar, M. & Alain, K. (2021). The piezo-hyperthermophilic archaeon Thermococcus piezophilus regulates its energy efficiency system to cope with large hydrostatic pressure variations. Frontiers in Microbiology (1664-302X) (Frontiers Media SA), 2021-11 , Vol. 12 , P. 730231 (11p.). doi 10.3389/fmicb.2021.730231

Schauberger, C., Glud, R. N., Hausmann, B., Trouche, B., Maignien, L., Poulain, J., Wincker, P., Arnaud-Haond, S., Wenzhöfer, F., Thamdrup, B. (2021). Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients. The ISME Journal (1751-7362) (Springer Science and Business Media LLC) Sous presse. doi : 10.1038/s41396-021-01021-w

Slobodkina, G., Allioux, M., Merkel, A., Cambon Bonavita, M-A., Alain, K., Jebbar, M., Slobodkin, A. (2021). Physiological and Genomic Characterization of a Hyperthermophilic Archaeon Archaeoglobus neptunius sp. nov. Isolated From a Deep-Sea Hydrothermal Vent Warrants the Reclassification of the Genus Archaeoglobus. Frontiers in Microbiology, 12, 679245 (15p.). doi :10.3389/fmicb.2021.679245

Zeng, X., Alain, K., & Shao, Z. (2021), Microorganisms inhabiting deep-sea hydrothermal vents. Marine Life Science & Technology (2096-6490) (Springer Science and Business Media LLC), Vol. 3 , P. 204-230. https://doi.org/10.1007/s42995-020-00086-4. doi:  10.3389/fmicb.2021.645784