Year 2021

Alain, K., Vince, E., Courtine, D., Maignien, L., Zeng, X., Shao, Z., Jebbar, M. (2021). Thermococcus henrietii sp. nov., a novel extreme thermophilic and piezophilic sulfur-reducing archaeon isolated from a deep-sea hydrothermal chimney. International Journal of Systematic and Evolutionary Microbiology, 71(7), 004895 (6p.). Publisher's official version : doi.org/10.1099/ijsem.0.004895, Open Access version : https://archimer.ifremer.fr/doc/00706/81761/

Allioux, M., Jebbar, M., Slobodkina, G., Slobodkin, A., Moalic, Y., Frolova, A., Shao, Z., Alain, K. (2021). Complete genome sequence of Thermosulfurimonas marina sp. nov., an anaerobic thermophilic chemolithoautotrophic bacterium isolated from a shallow hydrothermal vent. Marine Genomics, 55, 100800. doi. org/10.1016/j.margen.2020.100800.

Brandt, M., Trouche, B., Quintric, L., Günther, B., Wincker, P., Poulain, J., Arnaud‐haond, S. (2021). Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding. Molecular Ecology Resources, 21(6), 1904-1921. doi.org/10.1111/1755-0998.13398

Brandt, M., Pradillon, F., Trouche, B., Henry, N., Liautard-Haag, C., Cambon-Bonavita, M-A., Cueff-Gauchard, V., Wincker, P., Belser, C., Poulain, J., Arnaud-Haond S., Zeppilli, D. (2021). Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. Scientific Reports, 11(1), 7856 (14p.). Publisher's official version : doi.org/10.1038/s41598-021-86396-8

Cambon-Bonavita, M-A., Aubé, J., Cueff-Gauchard, V., Reveillaud, J. (2021). Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria. Microbiome 9, 87 (2021). doi.org/10.1186/s40168-021-01045-6

Cathalot, C., Roussel, E.G., Perhirin, A., Creff, V., Donval, J.-P., Guyader, V., Roullet, G., Gula, J., Tamburini, C., Garel, M.,  Godfroy, A.,  Sarradin, P.-M. (2021). Hydrothermal plumes as hotspots for deep-ocean heterotrophic microbial biomass production. Nature Communications 12, 6861. doi.org/10.1038/s41467-021-26877-6

Courtine D., Vince E., Maignien L., Philippon X., Gayet Nicolas, Shao Zongze, Alain K. (2021). Thermococcus camini sp. nov., a hyperthermophilic and piezophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Atlantic Ridge. International Journal of Systematic and Evolutionary Microbiology, 71(7), 004853 (7p.). doi : 10.1099/ijsem.0.004853

Cozannet, M., Borrel, G., Roussel, E., Moalic, Y., Allioux, M., Sanvoisin, A., Toffin, L., Alain, K. (2021). New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments. Microorganisms, 9(1), 30. doi.org/10.3390/microorganisms9010030.

Dibner, R. R, Weaver, A M., Brock, M. T, Custer, G. F, Morrison, H. G, Maignien, L., Weinig C. (2021). Time outweighs the effect of host developmental stage on microbial community composition. FEMS Microbiology Ecology, Volume 97, Issue 9, September 2021, fiab102. Doi : org/10.1093/femsec/fiab102

Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, Blankenberg, D., Eppley, J. M., Sjödin, A., Scott, J. J., Vasquez-Campos, X., McKay, L. J., McDaniel, E. A., Stevens, S. L. R., Aderson, R. E., Fuesel, J., Fernandez-uerra, A., Maignien, L., Delmont, T. O., Willis, A. D. (2021). Community-led, integrated, reproducible multi-omics with anvi’o. Nature Microbiology, 6(1), 3-6. doi.org/10.1038/s41564-020-00834-3

François, D., X., Godfroy, A., Mathien, C., Aubé J., Cathalot, C., Lesongeur, F., L’Haridon, S., Philippon, X., Roussel, E., G. (2021). Persephonella atlantica sp. nov.: How to adapt to physico-chemical gradients in high temperature hydrothermal habitats. Systematic and Applied Microbiology, SYAPM 126176, Volume 44, Issue 1, January 2021, 126176, doi:1016/j.syapm.2020.12617

Guennec, A., Brelle, L., Balnois, E., Linossier, I., Renard, E., Langlois, V., Faÿ, F., Chen, G. Q., Simon-Colin, C., Vallée-Réhel, K. (2021). Antifouling properties of amphiphilic poly(3-hydroxyalkanoate): an environmentally-friendly coating. Biofouling. 37 (8). 894-910. Doi : 10.1080/08927014.2021.1981298

Hajj, M., Langendijk-Genevaux, P., Batista, M., Quentin, Y., Laurent, S., Capeyrou, R., Abdel-Razzak, Z., Flament, D., Chamieh, H., Fichant, G., Clouet-D’orval, B., Bouvier, M. (2021). Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase. Biomolecules, 11(7), 950 (23p.). Publisher's official version doi.org/10.3390/biom11070950, Open Access version : https://archimer.ifremer.fr/doc/00702/81418/

Haverkamp, T.H.A, Lossouarn, J., Zhaxybayeva, O., Lyu, J., Bienvenu, N., Geslin, C. & Nesbø, C.L. (2021). Newly identified proviruses in Thermotogota suggest that viruses are the vehicles on the highways of interphylum gene sharing. Environmental Microbiology, 23(11), 7105-7120. doi: 10.1111/1462-2920.15723.

Klasek, S.A., Brock, M.T. , Morrison, H.G., Weinig, C., Maignien, L. (2021). Soil Microsite Outweighs Cultivar Genotype Contribution to Brassica Rhizobacterial Community Structure. Front Microbiol  2021 Apr 7;12:645784. doi: 10.3389/fmicb.2021.645784

Langendijk-Genevaux, Hajj, M., Batista P., M., Quentin, Y., Laurent, S., Capeyrou, R., Abdel-Razzak, Z., Flament, D., Chamieh, H., Fichant, G., Clouet-d’Orval, B., Bouvier, M. (2021). Phylogenetic Diversity of Lhr Proteins and Biochemical Activities of the Thermococcales aLhr2 DNA/RNA Helicase. Biomolecules, 11, 950. doi.org/10.3390/biom11070950

Le Gal, M., Renard, E., Simon-Colin, C., Larrat, B., Langlois, V. (2021). Amphiphilic and Perfluorinated Poly(3-Hydroxyalkanoate) Nanocapsules for 19F Magnetic Resonance Imaging. Bioengineering-basel. 8 (9). 121 (15p.). Doi : 10.3390/bioengineering8090121

Le Gal, M., Rios de Anda, A., Michely, L., Simon Colin, C., Renard, E., Langlois, V. (2021). Synthesis of Fluorinated Polyhydroxyalkanoates from Marine Bioresources as a Promising Biomaterial Coating. Biomacromolecules. 22 (11). 4510-4520. Doi : 10.1021/acs.biomac.1c00770

Le Guellec, S., Leroy, E., Courtine, D., Godfroy, A., Roussel, E. (2021). H2-dependent formate production by hyperthermophilic Thermococcales: an alternative to sulfur reduction for reducing-equivalents disposal. The ISME Journal, Volume 15, Issue 12, December 2021, Pages 3423–3436.. doi : 10.1038/s41396-021-01020-x

Mieszkin, S., Pouder, E., Uroz, S., Simon-Colin, C. & Alain, K. (2021). Acidisoma silvae sp. nov. and Acidisoma cellulosilytica sp. nov., two acidophilic bacteria isolated from decaying wood, hydrolyzing cellulose and producing poly-3-hydroxybutyrate. Microorganisms 9, 2053. Doi.org/10.3390/microorganisms9102053

Moalic, Y., Dalmasso, C., Courtine, D., Hartunians, J., Georges, M., Oger, P., Zeng, X., Shao, Z., Jebbar, M. & Alain, K. (2021). The piezo-hyperthermophilic archaeon Thermococcus piezophilus regulates its energy efficiency system to cope with large hydrostatic pressure variations. Frontiers in Microbiology (1664-302X) (Frontiers Media SA), 2021-11 , Vol. 12 , P. 730231 (11p.). doi 10.3389/fmicb.2021.730231

Pillot, G., Amin ali, O., Davidson, S., Shintu, L., Godfroy, A., Combet-Blanc, Y., Bonin, P., Liebgott, P-P. (2021). Identification of enriched hyperthermophilic microbial communities from a deep-sea hydrothermal vent chimney under electrolithoautotrophic culture conditions. Scientific Reports. 11 (1). 14782 (12p.). Doi : 10.1038/s41598-021-94135-2
Pillot, G., Amin ali, O., Davidson, S., Shintu, L., Combet-Blanc, Y., Godfroy, A., Bonin, P., Liebgott, P-P. (2021). Evolution of Thermophilic Microbial Communities from a Deep-Sea Hydrothermal Chimney under Electrolithoautotrophic Conditions with Nitrate. Microorganisms. 9 (12). 2475 (17p.). Doi : 10.3390/microorganisms9122475
Poulain, J., Wincker, P., Arnaud-Haond, S., Wenzhöfer, F., Thamdrup, B. (2021). Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients. The ISME Journal (1751-7362) (Springer Science and Business Media LLC), 2021-12, Vol. 15, N. 12, P. 3455-3467. doi : 10.1038/s41396-021-01021-w

Slobodkina, G., Allioux, M., Merkel, A., Cambon Bonavita, M-A., Alain, K., Jebbar, M., Slobodkin, A. (2021). Physiological and Genomic Characterization of a Hyperthermophilic Archaeon Archaeoglobus neptunius sp. nov. Isolated From a Deep-Sea Hydrothermal Vent Warrants the Reclassification of the Genus Archaeoglobus. Frontiers in Microbiology, 12, 679245 (15p.). doi :10.3389/fmicb.2021.679245

Thamdrup, B.,  Schauberger, C., Larsen, M., Trouche, B., Maignien, L., Arnaud-Haond, S., Wenzhöfer, F., Glud, R. N. (2021). Anammox bacteria drive fixed nitrogen loss in hadal trench sediments. Proceedings Of The National Academy Of Sciences Of The United States Of America. 118 (46). e2104529118 (7p.). Doi : 10.1073/pnas.2104529118

Thiroux, S., Dupont, S., Nesbø, C. L., Bienvenu, N., Krupovic, M., L'Haridon, S., Marie, D., Forterre, P., Godfroy, A., Geslin, C. (2021). The first head-tailed virus, MFTV1, infecting hyperthermophilic methanogenic deep-sea archaea. Environmental Microbiology. 23 (7). 3614-3626. Doi : 10.1111/1462-2920.15271

Trouche, B., Brandt, M., Belser, C., Orejas, C., Pesant, S., Poulain, J., Wincker, P., Auguet, J-C., Arnaud-Haond, S., Maignien, L. (2021). Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean—Atlantic Gradient. Frontiers In Microbiology. 12. 702016 (14p.). Doi : 10.3389/fmicb.2021.702016

Zeng, X., Alain, K., & Shao, Z. (2021), Microorganisms inhabiting deep-sea hydrothermal vents. Marine Life Science & Technology (2096-6490) (Springer Science and Business Media LLC), Vol. 3 , P. 204-230. https://doi.org/10.1007/s42995-020-00086-4. doi:  10.3389/fmicb.2021.645784